Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Info

SAVU documentation is found here

Load Savu:

  1. Open terminal

  2. Config the process list to make sure you are happy. BL scientist may do this for you.

  3. To submit savu jobs to the cluster use:

Code Block
ssh wilson
module load savu/4.2-slurm
savu_mpi <IN_FILE> <PROCESS_LIST> <OUT_FOLDER> -d <TMP_FOLDER>  

Edit process lists:

Code Block
module load savu
// Will load savu in cwd and allow you to create processlists. You cannot submit to cluster using this module. 
// This should be done in a normal terminal, do not ssh into wilson

savu_config - i xxxxx.nxs 
// Where "xxxx.nxs" is the path of your process list (ie. 3x_fd_vo_AST_tiff.nxs). 
// This command will open up the savu config with this process list. 
// You can omit -i xxxx.nxs to open config with an empty list. You will then need to populate savu with each process


disp -a
// This will display each process module and the parameters that you can change. 
// Use -avv for more detailed information.

fg /ctrl + z
// Will bring savu config to foreground / Send config to background to allow you to run savu_mpi in the same terminal window

add RemoveAllRings 2
// will add the module RemoveAllRings to position 2 in the process list. If no number is included it will add to the end.

rem 2
// will remove module at position 2 in the list