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Run the script in the current console by pressing Ctrl-Alt-Enter or the toolbar button. A trace should appear in Plot 1.

If you just want to run a small section of the code, highlighting it and pressing Ctrl-Alt-Enter will send the highlighted lines to the console.

Debug Mode

Debugging allows you to stop the running of a script at specific points to check everything is proceeding as expected.  This is very useful for finding the cause of incorrect output.

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Make sure the HDF5 file is in one of the data project folder, navigate to the file, right click and select convert.Convert - Convert Wizard...

Select the conversion type video from image stack and click Next

Make sure the correct dataset is selected, the output file name is OK, then adjust the parameters in the advanced area to optimise the histogramming, downsampling (larger downsampling, smaller file) and frame rate.

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Finally select the orientation of the dataset to animate through using the slicing options and click Finish.

After clicking finish a progress bar will appear on the wizard, when the wizard is finished the avi movie file should appear in the chosen output folder.

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