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- Uninstall previous Miniconda / Anaconda installs
- Install Miniconda from https://conda.io/miniconda.html (restart your MAC)
Once miconda is installed run the following in the terminal (before running the second command you may need to install Node.js, see docs here):
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conda install -c conda-forge hyperspy jupyter labextension install @jupyter-widgets/jupyterlab-manager |
- Install pyxem:
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conda install -c conda-forge diffpy.structure pip install https://github.com/pyxem/pyxem/archive/master.zip |
- Install atomap and pixstem:
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pip install atomap pixstem |
To check that all is well with your install, open a Jupyter lab by running:
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jupyter lab |
Select Python3 under Notebook and copy the following block of code to the first cell in the notebook:
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%matplotlib qt
import hyperspy.api as hs
import numpy as np
import atomap.api as am
import pyxem as px
import pixstem as ps |