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As a users, the two important pieces of software you will require are CS Studio and GDA. Click the Software image for more information:
CS Studio
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$ tlauncher -f diad |
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| title | Open your Data folder |
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$ cd dls/k11/data/2023/<VISIT NUMBER>/
$ gio open . |
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$ Module load imageJ/2019
$ imagej |
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$ module load savu |
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$ savu_config -i <path to savu list> |
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savu_mpi <raw data> <process list> <output dir> |
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DAWN
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DAWN on DIAD
How to install dawn
DIAD example diffraction + imaging data
Cheat sheets
Videos?
Work out the main features that we use on DIAD:
The following will load dawn in linux with access to 32GB of memory.
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$ module load dawn |
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Load Savu:
Open terminal
Config the process list to make sure you are happy. BL scientist may do this for you.
To submit savu jobs to the cluster use:
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ssh wilson
module load savu/4.2-slurm
savu_mpi <IN_FILE> <PROCESS_LIST> <OUT_FOLDER> -d <TMP_FOLDER> |
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Edit process lists:
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module load savu
// Will load savu in cwd and allow you to create processlists. You cannot submit to cluster using this module.
// This should be done in a normal terminal, do not ssh into wilson
savu_config - i xxxxx.nxs
// Where "xxxx.nxs" is the path of your process list (ie. 3x_fd_vo_AST_tiff.nxs).
// This command will open up the savu config with this process list.
// You can omit -i xxxx.nxs to open config with an empty list. You will then need to populate savu with each process
disp -a
// This will display each process module and the parameters that you can change.
// Use -avv for more detailed information.
fg /ctrl + z
// Will bring savu config to foreground / Send config to background to allow you to run savu_mpi in the same terminal window
add RemoveAllRings 2
// will add the module RemoveAllRings to position 2 in the process list. If no number is included it will add to the end.
rem 2
// will remove module at position 2 in the list |
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