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- Uninstall previous Miniconda / Anaconda installs
- Install Miniconda from https://conda.io/miniconda.html (restart your MAC)
conda install -c conda-forge hyperspy jupyter labextension install @jupyter-widgets/jupyterlab-manager
- Install pyxem:
conda install -c conda-forge diffpy.structure pip install https://github.com/pyxem/pyxem/archive/master.zip
- Install atomap and pixstem:
pip install atomap pixstem
To check that all is well with your install, open a Jupyter lab by running:
Select Python3 under Notebook and copy the following block of code to the first cell in the notebook:
%matplotlib qt import hyperspy.api as hs import numpy as np import atomap.api as am import pyxem as px import pixstem as ps
If the installation is correct, you should not get any error messages.