Load Savu:
Open terminal
Config the process list to make sure you are happy. BL scientist may do this for you.
To submit savu jobs to the cluster use:
ssh wilson module load savu/4.2-slurm savu_mpi <IN_FILE> <PROCESS_LIST> <OUT_FOLDER> -d <TMP_FOLDER> |
Edit process lists:
module load savu // Will load savu in cwd and allow you to create processlists. You cannot submit to cluster using this module. // This should be done in a normal terminal, do not ssh into wilson savu_config - i xxxxx.nxs // Where "xxxx.nxs" is the path of your process list (ie. 3x_fd_vo_AST_tiff.nxs). // This command will open up the savu config with this process list. // You can omit -i xxxx.nxs to open config with an empty list. You will then need to populate savu with each process disp -a // This will display each process module and the parameters that you can change. // Use -avv for more detailed information. fg /ctrl + z // Will bring savu config to foreground / Send config to background to allow you to run savu_mpi in the same terminal window add RemoveAllRings 2 // will add the module RemoveAllRings to position 2 in the process list. If no number is included it will add to the end. rem 2 // will remove module at position 2 in the list |