Once miconda is installed run the following in the terminal (before running the second command you may need to install Node.js, see docs here):
conda install -c conda-forge hyperspy jupyter labextension install @jupyter-widgets/jupyterlab-manager |
conda install -c conda-forge diffpy.structure pip install https://github.com/pyxem/pyxem/archive/master.zip |
pip install atomap pixstem |
To check that all is well with your install, open a Jupyter lab by running:
jupyter lab |
Select Python3 under Notebook and copy the following block of code to the first cell in the notebook:
%matplotlib qt import hyperspy.api as hs import numpy as np import atomap.api as am import pyxem as px import pixstem as ps |
If the installation is correct, you should not get any error messages.