Command-line processing [DAWN 2.1]

Once a processing chain has been configured, data can be processed without starting the DAWN UI, by calling dawn from the command-line using the following arguments:

-noSplash -application org.dawnsci.commandserver.processing.processing -data @none -path /path/to/config/file.json

The .json file is a JSON config file which specifies which data to process, to where, and where the file that contains the processing steps is.

Below is an example structure for a config file:

{
	"name": "HeadlessProcessingRun",
	"runDirectory": "/path/to/temp/folder",
	"filePath": "/path/to/file/to/process.nxs",
	"datasetPath": "/entry/dataset_name/data",
	"axesNames": [["/entry/dataset_name/axis_dim0_0","/entry/dataset_name/axis_dim0_1"],null,null],
	"outputFilePath": "/path/to/output/file.nxs",
	"dataDimensions": [1,2],
	"processingPath": "/path/to/processing/chain.nxs",
	"deleteProcessingFile": false
}

Here is a description of what should be in each file:

name : just a label, can be any string you like

runDirectory : temporary folder where logging can be stored

filePath : path to the data file you want to process

datasetPath: name of the dataset in the file

axesNames: names of the axes dataset you wish to propagate with the data. Is a list of lists "[[something], [something, another], [something]]", i.e. 1 list for each dimension of the data you are processing. For example, for a temperature scan of a detector with energy and angle axis, where you want to propagate the temperature and time axis of the scan dimension the list would be [[temperature, time], [angle], [energy]].

outputFilePath : path to the output file to be created

dataDimensions: the dimensions of the dataset that correspond to the frame to be processed. For example, a single image, processed as an image would have dataDimensions of [0,1], processing the images from a stack would have dataDimensions of [1,2], and processing images from a 2d grid scan would have [2,3].

processingPath: path to the processing chain description exported from the processing perspective (or a previously processed file)

deleteProcessingFile: set to false to stop the process deleting the exported chain when it is finished.