Versions Compared

Old Version 1

changes.mady.by.user Malte Storm

Saved on

compared with

New Version 2

changes.mady.by.user Malte Storm

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

General information

The TXM reconstruction process requires 3 steps:

  1. Pre-processing to create data compatible with the generic reconstruction process
  2. Center-finding
  3. Final reconstruction

All the required scripts should be located in:

Code Block
/dls/i13/data/YYYY/mgXXXXX-X/processing/TXMreco

with the year and beamtime ID, respectively.


Tip

The full reconstruction

Pre-processing

The pre-processing script

Code Block
./TXMclusterPreprocessing.sh -scan XXXX

will start the required process on the cluster. The script will perform some required steps (logfile processing, dark & flat correction) and also some registration steps as required. These are defined in 

Code Block 
pythonTXMpreprocessing.py

and should only be changed after consultation with your local contact.

The status of the process can be checked with a:

Code Block
watch qstat
Note

Please do not change any of the scripts / files without consultation of your local contact.

Any changes might make the reconstruction inoperable!