TXM user guide: Reconstruction

General information

The TXM reconstruction process requires 3 steps:

1. Pre-processing to create data compatible with the generic reconstruction process
2. Center-finding
3. Final reconstruction

All the required scripts should be located in:

/dls/i13/data/YYYY/mgXXXXX-X/processing/TXMreco

with the year and beamtime ID, respectively.

Pre-processing

The pre-processing script

./TXMclusterPreprocessing.sh -scan XXXX

will start the required process on the cluster. The script will perform some required steps (logfile processing, dark & flat correction) and also some registration steps as required. These are defined in 

pythonTXMpreprocessing.py

and should only be changed after consultation with your local contact.

The status of the process can be checked with a:

watch qstat