This workshop took place Monday to Friday (April 19th to 23rd) 2021 on Zoom.
Speakers: Phillip Crout (University of Cambridge) Magnus Nord (NTNU, Norway) Francisco de la Peña (University of Lille) Eric Prestat (University of Manchester- SuperSTEM) Timothy Poon (Diamond Light Source) Thomas Slater (ePSIC - Diamond Light Source)
and request to join this Google Group (you will need a Google account to join). This would then give you access to the cluster on GCP. Once you start the server, you will have to clone a github repository that contains all the notebooks for the workshop. The data required for the workshop should appear on your /home directory from the start.
For Q&A both before and during the workshop we will be running a Slack channel.
Installation guide- Conda installation
These instructions are provided to enable you to have your personalised hyperspy (and other packages covered in this workshop) installed on you local machine. Having the installation done through this route allows you to have these packages updated independent of each other, in case there is a new release in future.
Please follow the steps below for the installation:
Please note that given the number of participants in this year’s workshop we may not be able to provide technical support for local installations.
To test your installation, from the same prompt, run:
This would open a Jupyter notebook launcher in your web browser. Under Notebook select Python 3 button to open a new notebook. Copy this code to the first cell and run (press shift + enter). If the installation is correct you should not get any error messages (Note that you may get a Warning about pyOpenCl that can be ignored.).
import hyperspy.api as hs
import pyxem as pxm
import atomap.api as am
import ParticleSpy.api as ps
Workshop Notebooks and Presentations
We will gradually make the Jupyter notebooks, example datasets and presentations available here to download. In the meantime, we will be updating this github repository: